Our world-renowned researchers and use novel culture-independent molecular approaches and bioinformatics tools to answer important questions about the role of microbial communities in human and environmental health.
Research Programs
Recent Publications
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires

Schoelmerich, Marie C., Ly, Lynn, West-Roberts, Jacob, Shi, Ling Dong, Shen, Cong, Malvankar, Nikhil S., Taib, Najwa, Gribaldo, Simonetta, Woodcroft, Ben J., Schadt, Christopher W., et al. (2024) Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires. Nature Communications, 15, pp.Article number: 5414.
3 citations on Web of Science
3 citations on Scopus
Whole genome CRISPRi screening identifies druggable vulnerabilities in an isoniazid resistant strain of Mycobacterium tuberculosis

Wang, Xin Yue, Jowsey, William J., Cheung, Chen Yi, Smart, Caitlan J., Klaus, Hannah R., Seeto, Noon E.J., Waller, Natalie J.E., Chrisp, Michael T., Peterson, Amanda L., Ofori-Anyinam, Boatema, et al. (2024) Whole genome CRISPRi screening identifies druggable vulnerabilities in an isoniazid resistant strain of Mycobacterium tuberculosis. Nature Communications, 15 (1), pp.Article number: 9791.
11 citations on Web of Science
12 citations on Scopus
Altered immunophenotypic expression in the peripheral bladder cancer immune landscape
Mackenzie, Nathan J, Zimmermann, Kate, Nicholls, Clarissa, Perera, Mahasha PJ, Ngoo, Alexander, Jeffery, Penny L, Vela, Ian, Kenna, Tony J, Williams, Elizabeth D., Thomas, Patrick B (2024) Altered immunophenotypic expression in the peripheral bladder cancer immune landscape. Immunology and Cell Biology, 102 (10), pp.949-962.
citations on Web of Science
citations on Scopus
Multiple serum biomarkers associate with mortality and interstitial lung disease progression in systemic sclerosis

Parker, Matthew James Sinclair, Jee, Adelle S., Hansen, Dylan, Proudman, Susanna, Youssef, Peter, Kenna, Tony J., Stevens, Wendy, Nikpour, Mandana, Sahhar, Joanne, Corte, Tamera J. (2024) Multiple serum biomarkers associate with mortality and interstitial lung disease progression in systemic sclerosis. Rheumatology, 63 (11), pp.2981-2988.
12 citations on Web of Science
10 citations on Scopus
Microbiome-metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient

Freire-Zapata, Viviana, Holland-Moritz, Hannah, Cronin, Dylan R., Aroney, Sam, Smith, Derek A., Wilson, Rachel M., Ernakovich, Jessica G., Woodcroft, Ben J., Bagby, Sarah C., Mondav, Rhiannon, et al. (2024) Microbiome-metabolite linkages drive greenhouse gas dynamics over a permafrost thaw gradient. Nature Microbiology, 9 (11), pp.2892-2908.
12 citations on Web of Science
11 citations on Scopus
Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health

Vera Ponce de Leon, Arturo, Hensen, Tim, Hoetzinger, Matthias, Gupta, Shashank, Weston, Bronson, Johnsen, Sander M., Rasmussen, Jacob A., Gronlund Clausen, Cecilie, Pless, Louisa, Andrade Verissimo, Ana Raquel, et al. (2024) Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health. Nature Microbiology, 9 (11), pp.3059-3074.
7 citations on Web of Science
7 citations on Scopus
Quest for Orthologs in the Era of Biodiversity Genomics

Langschied, Felix, Bordin, Nicola, Cosentino, Salvatore, Fuentes-Palacios, Diego, Glover, Natasha, Hiller, Michael, Hu, Yanhui, Huerta-Cepas, Jaime, Coelho, Luis Pedro, Iwasaki, Wataru, et al. (2024) Quest for Orthologs in the Era of Biodiversity Genomics. Genome Biology and Evolution, 16 (10), pp.Article number: evae224.
10 citations on Web of Science
9 citations on Scopus
The need for high-resolution gut microbiome characterization to design efficient strategies for sustainable aquaculture production

Gupta, Shashank, Vera Ponce de Leon, Arturo, Kodama, Miyako, Hoetzinger, Matthias, Gronlund Clausen, Cecilie, Pless, Louisa, Andrade Verissimo, Ana Raquel, Stengel, Bruno, Calabuig, Virginia, Kvingedal, Renate, et al. (2024) The need for high-resolution gut microbiome characterization to design efficient strategies for sustainable aquaculture production. Communications Biology, 7 (1), pp.Article number: 1391.
2 citations on Web of Science
4 citations on Scopus
Soft robotic artificial left ventricle simulator capable of reproducing myocardial biomechanics

Davies, James, Thai, Mai Thanh, Sharma, Bibhu, Hoang, Trung Thien, Nguyen, Chi Cong, Phan, Phuoc Thien, Vuong, Thao Nhu Anne Marie, Ji, Adrienne, Zhu, Kefan, Nicotra, Emanuele, et al. (2024) Soft robotic artificial left ventricle simulator capable of reproducing myocardial biomechanics. Science Robotics, 9 (94), pp.Article number: eado4553.
7 citations on Web of Science
8 citations on Scopus
Liver click dECM hydrogels for engineering hepatic microenvironments

Milton, Laura A., Davern, Jordan W., Hipwood, Luke, Chaves, Juliana D.S., McGovern, Jacqui, Broszczak, Daniel, Hutmacher, Dietmar W., Meinert, Christoph, Toh, Yi Chin (2024) Liver click dECM hydrogels for engineering hepatic microenvironments. Acta Biomaterialia, 185, pp.144-160.
17 citations on Web of Science
18 citations on Scopus
Other Publications
A full list of CMR research publications can be found on the CMR Google Scholar listing.




