Our Research

Bowerman, Kate L., Lu, Kenn, McRae, Harley, Volmer, James, Zaugg, Julian, Pope, Phil, HugenHoltz, Philip, Greening, Christopher, Morrison, Mark, Soo, Rochelle M., et al. (2025) Metagenomic analysis of fecal microbiomes reveals genetic potential for diverse hydrogen management strategies in marsupials. mSystems, pp.Article number: e01608-25.

Kelliher, Julia M., Mirzayi, Chloe, Bordenstein, Sarah R., Oliver, Aaron, Kellogg, Christina A., Hatcher, Eneida L., Berg, Maureen, Baldrian, Petr, Aljumaah, Mashael, Miller, Cassandra Maria Luz, et al. (2025) STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies. Nature Microbiology, 10 (12), pp.3059-3068.

Angel, Nicola Z., Sullivan, Mitchell J., Alsheikh-Hussain, Areej, Fang, Liang, MacDonald, Samantha, Pribyl, Alena, Wills, Blake, Tyson, Gene W., Hugenholtz, Philip, Parks, Donovan H., et al. (2025) Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens. Gut Pathogens, 17, pp.Article number: 4.

Leu, Andy O., Woodcroft, Ben J., McIlroy, Simon J., Tyson, Gene W. (2025) Potential for aerobic hydrocarbon oxidation in archaea. Nature Communications, 16 (1), pp.Article number: 9188.

Li, Zhen, Riley, William J., Marschmann, Gianna L., Karaoz, Ulas, Shirley, Ian A., Wu, Qiong, Bouskill, Nicholas J., Chang, Kuang Yu, Crill, Patrick M., Grant, Robert F., et al. (2025) A framework for integrating genomics, microbial traits, and ecosystem biogeochemistry. Nature Communications, 16 (1), pp.Article number: 2186.

Xiong, Zhiqi, Yang, Xiaolin, Wang, Shule, Smart, Caitlan J., Sisson, Hazel M., Lin, Zhenli, Hu, Tianyu, Ran, Yuting, Xu, Chuyao, Yang, Xiuna, et al. (2025) Structure and assembly of the MmpL5/MmpS5 efflux transporter from Mycobacterium tuberculosis. Nature Communications, 16, pp.Article number: 4976.

Ong, Louis Jun Ye, Kasetsirikul, Surasak, Milton, Laura A., Nie, Xiaolei, Eiken, Andrea W., Chirnside, James, Young, Lucy May Gillian, Nordin, Gregory P., Toh, Yi Chin (2025) 3D-Printed Unibody Microfluidic Devices for Organ-on-Chip Applications. Advanced Materials Technologies, 10 (22), pp.Article number: e01056.

Lai, Wanxin, Alberdi, Antton, Leu, Andy, de Leon, Arturo V P, Kobel, Carl M., Aho, Velma T E, Roehe, Rainer, Pope, Phil B, Hvidsten, Torgeir R (2025) Metabolic capabilities of key rumen microbiota drive methane emissions in cattle. mSystems, 10 (10), pp.Article number: e00601-25 1-7.

Ni, Gaofeng, Wang, Min, Walker, Nicola, Muetzel, Stefan, Schmidt, Oliver, Fischer, André, Stemmler, René T, Leung, Pok Man, Zhang, Xiumin, Li, Qiushuang, et al. (2025) Methanogenesis inhibition remodels microbial fermentation and stimulates acetogenesis in ruminants. Proceedings of the National Academy of Sciences of the United States of America, 122 (41), pp.Article number: e2514823122 e2514823122.

Pope, Phil, Tyson, Gene (2025) Microbial matchmakers: Bifidobacterium evolution across animal hosts. Cell Host and Microbe, 33 (9), pp.1468-1470.