Our Research

Davín, Adrián A., Woodcroft, Ben J., Soo, Rochelle M., Morel, Benoit, Murali, Ranjani, Schrempf, Dominik, Clark, James W., Álvarez-Carretero, Sandra, Boussau, Bastien, Moody, Edmund R.R., et al. (2025) A geological timescale for bacterial evolution and oxygen adaptation. Science, 388 (6742), pp.Article number: eadp1853.

Woodcroft, Ben J., Aroney, Samuel T. N., Zhao, Rossen, Cunningham, Mitchell, Mitchell, Joshua A. M., Nurdiansyah, Rizky, Blackall, Linda, Tyson, Gene W. (2025) Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper. Nature Biotechnology.

Schoenborn, Sabrina, Yuan, Mingyang, Fell, Cody A., Liu, Chuanhai, Fletcher, David F., Priola, Selene, Chan, Hon Fai, Woodruff, Mia, Li, Zhiyong, Toh, Yi Chin, et al. (2025) Simulating big mechanically-active culture systems (BigMACS) using paired biomechanics-histology FEA modelling to derive mechanobiology design relationships. Biofabrication, 17 (3), pp.Article number: 035006.

Firkins, J. L., Henderson, E. L., Duan, H., Pope, P. B. (2025) International Symposium on Ruminant Physiology: Current perspective on rumen microbial ecology to improve fiber digestibility. Journal of Dairy Science, 108 (7), pp.7511-7529.

Guitart-Matas, Judith, Vera-Ponce de León, Arturo, Pope, Phillip B, Hvidsten, Torgeir R, Fraile, Lorenzo, Ballester, Maria, Ramayo-Caldas, Yuliaxis, Migura-Garcia, Lourdes (2025) Multi-omics surveillance of antimicrobial resistance in the pig gut microbiome. Animal Microbiome, 7 (1), pp.Article number: 65.

Szymczak, Paulina, Zarzecki, Wojciech, Wang, Jiejing, Duan, Yiqian, Wang, Jun, Coelho, Luis Pedro, de la Fuente-Nunez, Cesar, Szczurek, Ewa (2025) AI-Driven Antimicrobial Peptide Discovery: Mining and Generation. Accounts of Chemical Research, 58 (12), pp.1831-1846.

Ugarcina Perovic, Svetlana, Ramji, Vedanth, Chong, Hui, Duan, Yiqian, Maguire, Finlay, Coelho, Luis Pedro (2025) argNorm: normalization of antibiotic resistance gene annotations to the Antibiotic Resistance Ontology (ARO). Bioinformatics, 41 (5), pp.Article number: btaf173.

Fountain, Adam J., Waller, Natalie J.E., Cheung, Chen Yi, Jowsey, William, Chrisp, Michael T., Troll, Mark, Edelstein, Paul H., Cook, Gregory M., McNeil, Matthew B., Ramakrishnan, Lalita (2025) Verapamil and its metabolite norverapamil inhibit the Mycobacterium tuberculosis MmpS5L5 efflux pump to increase bedaquiline activity. Proceedings of the National Academy of Sciences of the United States of America, 122 (16), pp.Article number: e2426827122.

Liang, Yingke, Bueler, Stephanie A., Cook, Gregory M., Rubinstein, John L. (2025) Structure of Mycobacterial NDH-2 Bound to a 2-Mercapto-Quinazolinone Inhibitor. Journal of Medicinal Chemistry, 68 (7), pp.7579-7591.

Kobel, Carl M., Aho, Velma T.E., Øyås, Ove, Nørskov-Lauritsen, Niels, Woodcroft, Ben J, Pope, Phillip B. (2025) CompareM2 is a genomes-to-report pipeline for comparing microbial genomes. Bioinformatics, 41 (9), pp.Article number: btaf517.